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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004030
species: Oryza sativa
miRNA family: miR169j
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAGTCTCCTTGGCTAGCCT

miRNA*
 GATAGCCAAGGATGACTTGCCTG

mismatches: 4
bulges: 2
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pre-miRNA
 TTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTCCCTGAAGGATTAGCAATTTAATGATCCTTTAAGCTGGTTCATGGGCAGTCTCCTTGGCTAGC
CTGAGTG

dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((....((((((((((.........))))))))))....))..)))))))))))))))))))))..
..)))..


SIMILARITIES
miRBase osa-MIR169q: 4e-56

PMRD osa-miR169q: 4e-56

microPC miR169: 1e-43		UniProt no hits

RFAM MIR169_5: 7e-55		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST046089)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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